Qlucore
- Supplies software to explore and analyze microarray gene expression data sets, in Lund, Sweden.
- http://www.qlucore.com

Strand Life Sciences Pvt. Ltd.
- Develops data analysis and visualization software for microarray gene expression data from its base in Bangalore, India.
- http://www.strandls.com/

Score Comets
- Site introducing the comet assay, including equipment needed, hints and tips along with information on the Comet Assay IV software scoring system.
- http://www.scorecomets.com/

AiO
- Downloadable package integrating database, oligo ordering, DNA and protein analysis programs from Wuerzburg, Germany.
- http://134.99.88.55/aio/

MB DNA Analysis
- Program for statistical analysis and evaluation of the biological significance from microarray data. Includes key features, registration and download for Windows and Linux.
- http://www.molbiosoft.de/

The Ribosome Builder Project
- A software project to simulate the ribosome.
- http://rbuilder.sourceforge.net

RNAdraw
- A program for RNA secondary structure calculation and analysis under 32-bit Microsoft Windows.
- http://www.rnadraw.com

Short Time-series Expression Miner
- Freeware for clustering, comparing, and visualizing short time series gene expression data, maintained at Carnegie Mellon University, Pittsburgh.
- http://www.cs.cmu.edu/~jernst/stem/

MILANO - Microarray Literature-based Annotation
- A web-based tool to annotate lists of genes derived from microarray experiments. The annotations are generated by searching literature databases (Medline, GeneRIF) for the gene's synonyms co-occurrences with user-provided terms.
- http://milano.md.huji.ac.il/

Nucleic Acid and Protein Sequence Analysis Software
- From the Pittsburgh Superconputing Center, Carnegie Mellon University, Pittsburgh, USA.
- http://www.psc.edu/general/software/categories/sequence_analysis.html

Listing of DNA software links
- Katalog of links to sources of software for molecular biology.
- http://www.mpiz-koeln.mpg.de/~weisshaa/Adis/DNA-software-links.html

DNAStar
- Develops sequence analysis software for molecular biology.
- http://www.dnastar.com/

DNA Software
- Company selling software intended for molecular biology.
- http://www.dnasoftware.com/

Delila
- Software for Analysis of Protein and Nucleic-acid Sequences.
- http://www.lecb.ncifcrf.gov/~toms/delila.html

Integrated Genomics Inc.
- Software and services for life science, particularly for microbial genomics, in Chicago, Illinois.
- http://www.integratedgenomics.com/

Koada Technology
- Supplies software for automated analysis and quantification of microarray images.
- http://www.koada.com

Improved Outcomes Software Inc.
- Offers programs and custom development for the visualization, analysis and classification of gene expression and proteomics data, image-guided surgery and information technology. Based in Inverary, Ontario.
- http://www.improvedoutcomes.com/

List of Lists Annotated
- LOLA is a platform for uploading and comparing microarray generated gene lists, with curated, annotated and published data linked to citations, in an interface maintained by the Genomics Core Facility, George Washington University.
- http://lola.gwu.edu/

Gene Kinetics
- Software for transcription and cell cycle genes, providing peak intervals, max values as a function of decay of gene-activating principle, inhibitory mRNA, gene amplification, anabolic capacity and proteolysis.
- http://www.scienceandresearchdevelopmentinstitute.com/genkia.html

Redasoft Corp.
- Makers of restriction enzyme database program, to design cloning experiments and produce high resolution graphics of plasmid maps and alignments. Includes corporate details of company in Bradford, Ontario.
- http://www.redasoft.com/

Premier Biosoft International
- Developers of software for real time PCR primer design, TaqMan, molecular beacons, DNA microarray analysis, drawing restriction plasmid maps, gateway cloning experiments, protein interaction network and functional genomics.
- http://www.premierbiosoft.com/

Oligo Software
- Consensus, multiplex and degenerate primers, oligonucleotide database, secondary structure and difficult sequencing for researchers in PCR and related technologies. Developed since 1989, by Molecular Biology Insights Inc.
- http://www.oligo.net/

Chang Bioscience
- Microarray analysis, lab inventory, and primer sequence database tools from San Francisco, California.
- http://www.changbioscience.com/