Genex
- Gene expression database system with an integrated toolset that enables researchers to store, analyze, and communicate their data.
- http://sourceforge.net/projects/genex/

Comparative Genometrics
- Database of whole genome comparisons. Two genometric analyses are available: the DNA walk and two complementary representations during the initial phase. Primarily focused on prokaryotic genomes but also includes virus, organelles, phages and plasmids.
- http://www2.unil.ch/comparativegenometrics/

PlasmoDB: Malaria Parasite Genome Project
- Provides access to finished sequence for Plasmodium falciparum (strain 3D7), generated by the Sanger Institute, TIGR/NMRC, and Stanford, in addition to a wide range of related genomic-scale datasets from other sources.
- http://www.plasmodb.org/