IPACLICK - A freely accessible phonetic type-and-clickwriter for IPA symbols in Unicode. Also includes "superlinguistic" names of consonants shown in phonetic script. - http://www.ling.su.se/fon/IPA-tecken.htm
JSyn - Java Audio Synthesis - Java API for real-time audio synthesis and computer music. - http://www.softsynth.com/jsyn/
JavaSpeechLab - Speech analysis software written in Java 1.1. - http://scgwww.epfl.ch/JavaSpeechLab/
Optimality Theory Software - OTSoft is meant to facilitate analysis in Optimality Theory (Prince and Smolensky 1993) by using algorithms to do work that would have to be done (tediously, and perhaps unreliably) by hand. [by Bruce Hayes, UCLA] - http://www.linguistics.ucla.edu/people/hayes/otsoft/