Random number generation and RFC 1750 - Information regarding best practice random number generation for cryptography. - http://tools.ietf.org/html/rfc1750
Cryptodox - A community wiki. Basic cryptography theory and information security resources. - http://www.cryptodox.com/
Introduction to Cryptography - Elementary information on cryptographic theory, digital signatures, protocols, and cryptanalysis. - http://www.ssh.com/support/cryptography/introduction/
Boolean Function Nonlinearity - A detailed discussion of cryptographic nonlinearity, what it means and how it is computed, with active JavaScript panels to perform the computation. - http://www.ciphersbyritter.com/JAVASCRP/NONLMEAS.HTM
Index of Cryptography Papers Available Online - A research tool for the cryptography community maintained by Counterpane Systems. Over 400 papers online. - http://www.counterpane.com/biblio/
Chaffing and Winnowing - An interesting paper by Ron Rivest about providing confidentiality without encryption. - http://theory.lcs.mit.edu/~rivest/chaffing.txt
Foundations of Cryptography - Oded Goldreich. A public domain book available on-line. Only partially completed. - http://theory.lcs.mit.edu/~oded/frag.html