GelScape
- A free, platform-independent program to analyzing standard 1D and 2D protein gels. Users can calculate spot intensity, prepare HTML image maps and archive annotated gels to a public database using a standard web browser interface.
- http://www.gelscape.ualberta.ca/

Labimage 1D 2006
- Offers image analysis, reporting and data export for stained single dimension gels. Includes features and support from Kapelan GmbH, Germany.
- http://www.labimage.net/

Melanie
- Analyzes, annotates, and queries 2D gel samples for DNA and proteomic applications. Has recently been acquired by Amersham Biosciences and incorporated into ImageMaster 2D Platinum.
- http://www.expasy.org/melanie/

ProFINDER 2D
- Software from Perkin Elmer featuring high sensitivity, improved consistency, improved level of automation, and powerful data visualization.
- http://las.perkinelmer.com/Catalog/ProductInfoPage.htm?ProductID=1442-320

MCID Elite
- Comprehensive and flexible bioscience image acquisition and analysis system. Image analysis software for autoradiography, densitometry, fluorescence, montaging, gels and stereology.
- http://www.imagingresearch.com/products/MCID.asp

Gel-Quant
- 1D gel image analysis software for Windows.
- http://www.ampl.com.au/gq_frames.htm

BioNumerics 2D
- 2D gel analysis software that includes databasing, querying, and statistical analysis tools.
- http://www.applied-maths.com/bionumerics_2d/bionumerics_2d.htm

CAROL
- Offers point-pattern-matching for the analysis of 2D gel images. Java client application can be used directly from an internet browser or can be downloaded. Interfaces with the gelmatching server via the internet.
- http://gelmatching.inf.fu-berlin.de/Carol.html

Open2Dprot
- Open source quantitative proteomics database software for data mining and analysis of 2D gels. Will be based on the Unix version of the NCI GELLAB-II image analysis software.
- http://open2dprot.sourceforge.net/

TotalLab
- Software for 1D and 2D densitometry of gel patterns, blots, microtitre plates and colony counting.
- http://www.biosystematica.com/totallab2-d.htm

Impressionist
- Analyzes the quality of proteomics data and lets you set quality parameters to ensure data reliability throughout your experiments. Is easily installed on a server so that data from 2D gel experiments can be accessed on your Intranet using a web browser.
- http://www.genedata.com/products_template.php?basename=impressionist

ImageMaster 2D Platinum & DeCyder
- ImageMaster 2D Platinum has scripting tools to facilitate automated gel analysis and is powered by Melanie. Decyder was made specifically for 2D DIGE analysis.
- http://www5.amershambiosciences.com/APTRIX/upp00919.nsf/Content/Proteomics+In+Expression+Analysis+Area%5CProteomics+Image+Analysis

NCI Flicker
- A Java applet which reads two images from the Internet and then displays them in the your Web browser. It allows you to enhance them in various ways and to compare them visually in a third window called the flicker window.
- http://www-lmmb.ncifcrf.gov/flicker/

Delta2D & Protecs
- Produce dual channel images of 2D gels from different experiments or samples to show differences and similarities between two gels. Runs on Windows, Macintosh, and Linux.
- http://www.decodon.com/