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  Quantitative Genetics (28)

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Featured Websites in this category
http://www.nslij-genetics.org/soft/
Featured Site Genetic Analysis Software Database Open in a new browser windowLink Details
- Extensive, regularly-updated directory of linkage, mapping, and pedigree statistics software with links to obtain freely available copies.
- http://www.nslij-genetics.org/soft/

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Regular Websites in this category

Progeny Software Open in a new windowLink Details
- Supply pedigree drawing and genetic data management software for genetic research with a built-in customizable relational database.
- http://www.progenygenetics.com

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R/qtl: A QTL Mapping Environment Open in a new windowLink Details
- Program for mapping quantitative trait loci in experimental crosses. Includes sample graphics and tutorial in pdf format.
- http://www.rqtl.org

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Taxonomy 3 Open in a new windowLink Details
- A package of SAS macros for target discovery, detection of subphenotype and genetic heterogeneity. Can use an unlimited numbers of markers in a single multivariate analysis.
- http://taxonomy.delrieu.org

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Statistical Genetics Software Open in a new windowLink Details
- Collection of primarily Fortan 77 programs for genetic analysis. Requires registration to download. Site not updated since 1999.
- http://www.biomath.medsch.ucla.edu/faculty/klange/software.html

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PowerMarker Open in a new windowLink Details
- Set of statistical methods for discrete genetic data analysis, designed especially for microsatellite data analysis. Includes downloadable versions for Windows.
- http://statgen.ncsu.edu/powermarker/

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PopGen Open in a new windowLink Details
- Software that models population genetics with emphasis on genetic drift, selection, and migration. Windows 95.
- http://cc.oulu.fi/~jaspi/popgen/popgen.htm

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MapPop Open in a new windowLink Details
- Software for selective mapping and bin mapping. Windows version, documentation and references are available for download.
- http://www.bio.unc.edu/faculty/vision/lab/mappop/

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Locus Technology, Inc Open in a new windowLink Details
- Colony management, supports creation and tracking of research animals and for transgenic and congenic lines, knockouts and outbred strains.
- http://www.locustechnology.com/

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CircuSoft Instrumentation LLC Open in a new windowLink Details
- Transgenic mouse colony tracking and management software for the Mac and Windows. Includes demo software and manuals.
- http://www.circusoft.com/content/product/1/

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LAMS Open in a new windowLink Details
- Freeware record keeping system designed for a breeding colony of transgenic mice. Includes program description, system requirements, and installation instructions.
- http://www.hgu.mrc.ac.uk/Softdata/Lams/

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GeneticStudio Open in a new windowLink Details
- A complete suite of population genetic analysis programs for Mac. Includes plug-in modules. Not updated since 2001.
- http://www.umsl.edu/~biology/Dyer/GeneticStudio/

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DRIFT Open in a new windowLink Details
- Graphically represents the effect of genetic drift on gene frequency of one or more populations for a single locus, two allele model in a closed population using stochastic simulation methods. The DOS program is free.
- http://nitro.biosci.arizona.edu/zbook/general/gened.html

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Big Bench Software Open in a new windowLink Details
- Commercial software for the management of transgenic mouse colonies. Windows and Mac OS X. Demo version available.
- http://www.bigbenchsoftware.com/

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ASReml Cookbook Open in a new windowLink Details
- Statistical software designed for fitting mixed models for large datasets. Contains commented code for univariate and multivariate analysis including longitudinal and spatial analysis.
- http://uncronopio.org/ASReml

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The CompuPed 4.0 Pedigree Program Open in a new windowLink Details
- Extended and reverse pedigrees, inbreeding coefficients and genetic inheritance capabilities for Win and Mac. Download a demo or order online.
- http://www.mbfs.com/compuped/

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Animal Breeding & Genetics, Wageningen Open in a new windowLink Details
- Provides programmes in the area of animal breeding including SIP (Selection Index Program), MAGGIC (Gibbs Sampling) and GENEFLOW. Free software for WIN.
- http://www.zod.wau.nl/abg/hs/links/software.html

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Finnish Forest Genetics and Tree Breeding Open in a new windowLink Details
- Links to population and quantitative genetic software of interest in tree improvement, but also useful in other species.
- http://www.metla.fi/info/vlib/forestgen/software.htm

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Quantitative Genetics Resources Open in a new windowLink Details
- List of resources with links to programs and notes on a range of subjects including animal and plant breeding, and evolutionary and human genetics.
- http://nitro.biosci.arizona.edu/zbook/book.html

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Genup Open in a new windowLink Details
- Free software to assist learning quantitative genetic concepts (animal breeding) for WIN.
- http://www-personal.une.edu.au/~bkinghor/genup.htm

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Laboratory of Plant Breeding, Wageningen Open in a new windowLink Details
- Offers free downloadable genetics and plant breeding related software.
- http://www.dpw.wau.nl/pv/

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PIGBLUP and BREEDPLAN Open in a new windowLink Details
- Animal Genetics and Breeding Unit of University of New England, Australia have developed BLUP software for genetic selection of swine and beef cattle. Little information is on this site, so ABRI would have to be contacted.
- http://abri.une.edu.au

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VCE Open in a new windowLink Details
- Groeneveld's Variance Component Estimation software was developed for animal breeding problems. WIN and UNIX versions are free for research use. PEST documentation is also available here.
- http://www.tzv.fal.de/~eg/

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Ignacy Misztal Open in a new windowLink Details
- Animal breeding oriented programs for sparse matrix multiple trait REML and BLUP. Fortran source is free for research use.
- http://nce.ads.uga.edu/~ignacy/programs.html

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DFREML Open in a new windowLink Details
- Meyer's variance component estimation software for animal breeding is free for research purposes, available for UNIX, DOS and FORTRAN source code.
- http://agbu.une.edu.au/~kmeyer/dfreml.html

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DESIRE Open in a new windowLink Details
- Explore possible selection outcomes when goals (desired gains) are set for traits. This free WIN program is also contained in GENUP.
- http://www-personal.une.edu.au/~bkinghor/desire.htm

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Pedigree Viewer Open in a new windowLink Details
- Unique display and examination tool for large pedigrees, with inbreeding and genetic merit data also. Free WIN program.
- http://www-personal.une.edu.au/~bkinghor/pedigree.htm

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GeneFlow Inc Open in a new windowLink Details
- This Virginia, USA company provides software (GeneFlow, SynerGene, QTLlocate) and services oriented towards plant breeding. Website does not give prices or operating systems supported.
- http://www.geneflowinc.com/

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