Phylogeny at Pasteur
- A collection of phylogenetics programs available at Pasteur Institute. Includes a number of Phylip programs.
- http://bioweb.pasteur.fr/seqanal/phylogeny/intro-uk.html
TreeGen - Tree generation from distance data. [Results by email] - http://www.cbrg.ethz.ch/services/TreeGen
MultAlign - A multiple-sequence alignment program that also includes distance matrix methods for inferring trees. - http://bioinfo.genopole-toulouse.prd.fr/multalin/multalin.html
MatTree - An online server that hosts Distance Matrix based tools for phylogenetic clustering and comparison of phylogenetic trees. - http://www.mattree.org
Vista tools - Multiple sequence alignment server and whole genome alignment database. - http://gsd.lbl.gov/vista/index.shtml
GRIMM/MGR - A tool for constructing phylogenies based on gene order for unichromosomal and multichromosomal genomes - http://nbcr.sdsc.edu/GRIMM/mgr.cgi
SplitsTree 2 - Tool that uses split decomposition method to analyze and visualize distance data from biological sequences. - http://bibiserv.techfak.uni-bielefeld.de/splits/
ClustalW - EBI server for multiple sequence alignment on the web - http://www.ebi.ac.uk/clustalw/
TreeTop - Multiple sequence alignment based phylogenetic tree prediction program. - http://www.genebee.msu.su/services/phtree_reduced.html