DUSTY -- Radiation transfer through dust - DUSTY calculates the emerging spectrum of radiation from some source viewed after processing by a dusty region. The original radiation is scattered, absorbed and reemitted by the dust, and the emerging processed spectrum often provides the only available - http://www.pa.uky.edu/~moshe/dusty/
EZ Stellar Evolution - EZ (Evolve ZAMS) Stellar Evolution tracks the evolution of new (Zero-Age Main Sequence) stars throughout the bulk of their lives (until an event which EZ does not model occurs, such as a Helium Flash or core crystallization). The code is clean and well - http://www.kitp.ucsb.edu/~paxton/EZ-intro.html
FLASH -- AMR reacting hydrodynamics - The FLASH code is a reacting hydrodynamics code with adaptive mesh refinement for general astrophysical hydrodynamics problems. - http://flash.uchicago.edu/
COSMOMC-- Monte Carlo evaluation of CMB parameters - COSMOMC calculates a fast Markov Chain Monte-Carlo exploration of cosmological parameter space for an input set of constraints. - http://cosmologist.info/cosmomc/
Cloudy & Associates - Cloudy is an extensive, well-established, large-scale spectral synthesis code designed to simulate fully physical conditions within an astronomical plasma and then predict the emitted spectrum. The web page contains links to papers published with cloudy, - http://www.nublado.org/
PHOEBE (PHysics Of Eclipsing BinariEs) - PHOEBE is an infrastructure for the numerical modeling and analysis of eclipsing binary stars, using a variety of models. - http://www.fiz.uni-lj.si/phoebe
A TIPSY file viewer with MPI capabilities - [Open source - Linux] "Hubble in a bottle!" is visualization software for N-body simulations, which can be run in parallel using MPI for visualizing very large simulation results. Simulation output must be in TIPSY format. - http://hubble.sourceforge.net
Gadget-2 - The Gadget-2 code is an SPH simulation code designed for cosmological simulations but can be used for a wide variety of astrophysical hydrodynamics simulations with self-gravity. - http://www.mpa-garching.mpg.de/gadget/
The Art of Computational Science - An online `socratic book' pedagogically describing the building of a N-body simulation code for stellar systems. Software (in Ruby) is included. - http://www.artcompsci.org/
Enzo - Enzo is an adaptive mesh refinement (AMR), grid-based hybrid code (hydro + N-Body) which is designed to do simulations of cosmological structure formation. - http://cosmos.ucsd.edu/enzo/
ORSA - Orbit Reconstruction, Simulation and Analysis - ORSA is a C++ framework for the development of algorithms and programs oriented to the simulation and analysis of the orbital evolution of bodies in space. - http://orsa.sourceforge.net
Barnes & Hut Treecode Algorithm - [open source - multiplatform] A guide to a tree code algorithm implementation, used for astronomical N-body simulations. - http://www.ifa.hawaii.edu/~barnes/software.html
CFD codes list - A large list of commercial, public-domain and shareware Computational Fluid Dynamics codes. - http://icemcfd.com/cfd/CFD_codes.html
NEMO - [open source - Unix] An extendible stellar dynamics toolbox; has various programs to create, integrate, analyze and visualize N-body and SPH-like systems. In addition there are various tools to operate on images, tables and orbits, including FITS files to - http://bima.astro.umd.edu/nemo/
N-Body/Particle Simulation Methods - An extensive online tutorial with examples and code references. - http://www.amara.com/papers/nbody.html