Freedoom - Volunteer project to create a free version of Doom data files (WADs). These can be used with any Doom engine. (3-clause BSD) - http://freedoom.sourceforge.net/
Risen3D - A Doom engine port based on Doomsday Engine. OpenGL rendering. (GPLv2) [Windows] - http://r3d.doomwadstation.com/
Eternity Engine - A Doom engine port based on Smack My Marine Up (SMMU). Includes scripting, portals, polyobjects, and Heretic support, and will power the upcoming Millennium and Mordeth TC modifications. Software rendering. (GPL) [Windows] - http://doomworld.com/eternity/
Doom Legacy Wiki - Community resource, with news, documentation and editing tutorials. - http://legacywiki.net/
ZDoom - Enhanced port for Windows. With compiled and source downloads, development news, tutorials for the new features and a discussion forum. - http://www.zdoom.org/
Vavoom - Source port that supports Doom, Heretic, Hexen and Strife. Screenshots, information, download, forums and editing information. - http://www.vavoom-engine.com/
psDooM - A process monitor and manager for *nix systems, using Doom as an interface. - http://psdoom.sourceforge.net/
What is MBF, anyway? - Brief information about the Marine's Best Friend Doom engine, for DOS. - http://s91291220.onlinehome.us/doom/mbf.htm
ZDoomGL - OpenGL port for Windows. Binary and source code downloads, and a discussion forum. - http://zdoomgl.mancubus.net/
Client/Server Doom - Port for deathmatch play on the Internet. Offers downloads for Windows, FreeBSD and Linux, and a discussion forum. No longer maintained. - http://csdoom.sourceforge.net/
Doomsday HQ - Home of the Doomsday Engine, jDoom, jHeretic and jHexen. - http://www.doomsdayhq.com/
DOOM 7650 - Port of Doom to a Nokia cellphone - http://www.wildpalm.co.uk/Doom7650.html
Legacy - Engine with new features for enhanced deathmatch games, available for most major platforms. Contains discussion forums, development news, documentation, and links to derived engines. - http://legacy.newdoom.com/
PrBoom - A port for Windows and Linux that closely emulates the original game. - http://prboom.sourceforge.net/
Doom: System Administration Tool - Perform Unix administrator tasks with a Doom interface. - http://www.cs.unm.edu/~dlchao/flake/doom/
PDoom - DOS port, no longer updated. Source and binaries available. - http://www.aurigae.demon.co.uk/doom.html
NTDoom - Port to Windows NT, no longer developed. Binary and source downloads. - http://www.s2.org/ntdoom/
Doom3D - Windows port with Direct3D and splitscreen capabilities. Also supports full 3D stereoscopic effect. - http://www.doomworld.com/doom3d/
WinDoom - Windows port with higher resolutions and a console. Program download, source code, documentation and a front end available. Not updated. - http://www.doomworld.com/doom4win/
Boom - DOS port with editing features and a number of bug fixes. Compiled and source downloads and a feature list available. - http://www.teamtnt.com/boompubl/boom2.htm