SmartPPC Search Engine - Uses PHP and MySQL to keep advertiser/affiliate data, listings, full statistics, payment history, status, settings. - http://www.orbitscripts.com/smartppc.html
PHP Link Directory - Software for running a link exchange or professional directory sorted by categories. - http://www.phplinkdirectory.com/
Free Directory Script - Offers a free feature php based web directory script. - http://www.freedirectoryscript.com/
Link Department - Link management script with advanced yet easy to use admin control panel, fully template driven appearance, static HTML front-end and email notifications. - http://hitcode.mywebftp.com/products/linkdept/
LinksCaffePRO - A mySQL/PHP4 portal solution that allows to run Yahoo-style directory. - http://gonafish.com/index.php?id=1
InLink - Commercial PHP portal-solution for running a Yahoo-style directory directly from a web site. Supports SQL, MySQL, PostgreSQL. - http://www.in-portal.net/in-link/
phpOpen - Make a version of the Open Directory with this free PHP script. - http://sourceforge.net/projects/phpopen/phpOpen/
SkaLinks - A link manager with links checking and advanced advertisement system. [Freeware] - http://www.skalinks.com/
PHPMini Links - A link portal, which allows guests to add links as well. [Freeware] - http://www.phpmini.com/downloads/links.php
GentleSource Link and Bookmark Manager - Link manager can be used as link section of a website or a personal bookmark manager. You can publish links/bookmarks or hide them behind a login. [Free for private usage and non-profit organizations] - http://www.gentlesource.com/link-manager/
evoTopsites - Advanced top site software that functions as a toplist, link directory, and/or webring. Built on top of PHP/MySQL and features dynamic hit tracking. [Freeware, req. registration] - http://www.evo-dev.com/products/evotopsites/
Jade - A PHP and MySQL based directory and search engine application that works with templates. - http://www.jadetown.com/
K-Search - Pay Per Click/MetaSearch script [Commercial] - http://turn-k.net/k-search
K-Links Directory - Professional link indexing solution [Commercial] - http://turn-k.net/k-links
ScriptRocket Top Site - PHP Script for creating and run Top Sites. [Commercial] - http://www.scriptrocket.com/tstopsite.php
Monster Top List - Topsites script with webring, dynamic list position imaging, and RSS feeds. [Commercial] - http://www.monstertoplist.com
Softbiz Automatic Link Checker - Link validator tool written in PHP helps to check automatically if a page contain a link back to site. Helpful especially in link exchange or link popularity campaigns. - http://www.softbizscripts.com/automatic-link-checker-script-features.php
Softbiz Resource Repository Script - Run own software repository site like hotscripts. Customizable colors and graphics. Demo available. - http://www.softbizscripts.com/resource-repository-script-features.php
Softbiz Link Directory Script - Run own business link directory like dmoz. Customizable colors and graphics. Demo available. - http://www.softbizscripts.com/link-directory-script-features.php
aeDirectory - A free PHP link directory script allows to build theme links directory. - http://www.aewebworks.com/aedirectory.htm
Google API Search Script - Free PHP script to search Google. Can be reistricted to search one site and language. Requires Google free license key. [Freeware] - http://www.wwwsearchsolutions.com/google.php
X-Power Links - A links management script with advanced, but easy to use admin control panel, fully template driven appearance, static HTML front-end. [Commercial] - http://www.xpowerlinks.com/
Site Search Pro - A PHP fully-functional search engine for web site. Online demo. [Commercial] - http://www.site-search-pro.com/
iSearch - A PHP/MySQL script for allowing visitors to a website to perform a search on the contents of the site. Includes multiple language support. [Free and Commercial] - http://www.isearchthenet.com/isearch/
PhpDig - A search engine written in PHP that uses a MySQL database backend. It features indexing of both static and dynamic pages and full text indexing. - http://www.phpdig.net/
eDirectory - Application to manage online directories. Includes news, examples and FAQ. - http://www.edirectory.com/
phpLinks - A free link-farm, search engine PHP script that uses MySQL. - http://sourceforge.net/projects/phplinks/
FlexPHPLink - A link management system allows to add, edit or delete links , easy internationalization, cheap customize service. [Freeware] - http://www.china-on-site.com/flexphplink/
WSN Links - A fully templated searchable links portal. Option to auto-notify admin of submissions and submitter of approval via email. Users may rate, email, report, and comment on each link. [Free with crediting text in footer, or commercial] - http://scripts.webmastersite.net/wsnlinks/
phpYellow Pages - A generic directory builder to create free or paid directory [Free and commercial versions] - http://phpyellow.com/
Link Up Gold - Features unlimited categories and links, rating system, maillists, editor's pick, sponsors, and multiple languages. - http://www.phpwebscripts.com/linkupgold/
OpenRealty - A free, open source PHP real estate listing manager that uses a MySQL backend. - http://jonroig.com/freecode/openrealty/
phpODP - Add the content of The Open Directory Project to site. Let search, browse the categories. Also support for targeted advertising. - http://www.bie.no/products/phpodp/
Jax Link Lists - An online hyperlink list manager for small link lists. - http://www.jtr.de/scripting/php/linklists/index_eng.html
ScriptsCenter.com - A couple of commercial scripts, including AutoLinks+ and EzUpload. - http://www.scriptscenter.com/
phpHoo - A PHP script using MySQL that will display a "Yahoo-like" directory. - http://www.cable-modems.org/phpHoo/