JavaDeps
- Automatic dependency tracking in Java. [Open Source, GPL]
- http://www.cs.mcgill.ca/~stever/software/JavaDeps/

Viewtier Devenv
- A simple command-line development environment manager that allows reproducible Java builds. [Shareware]
- http://www.viewtier.com/products/devenv/

A Complete Makefile Setup for Java
- Comprehensive makefile for building Java class files, RMI stubs and skeletons, JNI header files, JAR archives. [Freeware]
- http://geosoft.no/development/javamake.html

JFig Java Configuration Management Tool
- A Configuration utility that provides simple, flexible and powerful functionality for managing one or more configurations in a java environment. It uses a combination of a hierarchy of configuration files, substitution variables and property variables. [O
- http://jfig.sourceforge.net/

experimentalstuff.com: A Make Tool for the Java Language
- An automated dependency analysis tool, which acts a drop-in replacement for javac, from Sun's skunkworks. It maintains a dependency database to only compile the minimum necessary. [Freeware]
- http://www.experimentalstuff.com/Technologies/JavaMake/index.html

JMK - Make in Java
- Utility for maintaining files in a consistent state, designed to support the task of writing platform independent make files. [LGPL]
- http://jmk.sourceforge.net/