The Prisoner's Dilemma - A simple yet powerful model for the problem of cooperation versus conflict in groups. The JAVA applet demonstrates the spread of 'altruism' and 'exploitation for personal gain.' - http://prisonersdilemma.groenefee.nl/
Iterated Prisoner's Dilemma - This site aims to be a comprehensive repository of information on the Iterated Prisoner's Dilemma, a major topic in artificial life, and a look at cooperation (and evolution of cooperation) between agents. - http://www2.lifl.fr/IPD/
Xerox PARC - This is a directory containing a lot of papers on Dynamics of Computation Area (Evolution of cooperation) from the XEROX PARC. - ftp://parcftp.xerox.com/pub/dynamics/
The Taumoda Lab - This site offers a way to learn how to study the evolution of cooperation through 3 models, based on the Prisoner's Dilemma. (Java applets included). - http://www.taumoda.com/web/PD/lab.html
Stanford Encyclopedia of Philosophy entry - This is a very complete description of the prisoner's dilemma and its variations. - http://plato.stanford.edu/entries/prisoner-dilemma/